slowkow

Kamil Slowikowski's repositories

tftargets

:dart: Human transcription factor target genes from 6 databases in convenient R format.

Language:R84 10 4

snpsea

:bar_chart: Identify cell types and pathways affected by genetic risk loci.

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proxysnps

:bookmark: Get SNP proxies from the 1000 Genomes Project.

Language:RMIT28 5 14

snpbook

:orange_book: Explore 1000 Genomes variant data with JavaScript.

Language:JavaScriptMIT8 3 1

fibrotime

:tangerine: View the gene expression response to TNF and IL-17A with vanilla Javascript and HTML.

Language:Jupyter Notebook7 40

dotfiles

Kamil's dotfiles

Language:Vim Script3 30

arrayqc

Quality control metrics for microarray data.

Language:RMIT2 40

awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

MIT1 30

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

MIT1 30

wiggleplotr

A small R package to make sequencing read coverage plots in R.

Language:RApache-2.01 30

baseapp

Bootstrap-based web application scaffolding built in Go on top of the Revel Web Framework w/ Docker build support

Language:GoMIT030

canvasEnsembl

canvasXpress plots with Ensembl API data

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cellBrowser

Python pipeline and Javascript scatter plot library for single-cell datasets

Language:JavaScriptGPL-3.0030

ClustVis

ClustVis web tool

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custard

:custard: Find overabundant profiles in time series gene expression data.

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ffbase

Basic (statistical) functionality for R package ff

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ggplot2

An implementation of the Grammar of Graphics in R

Language:RGPL-2.0030

gsheets

Pythonic wrapper for the Google Sheets API

Language:PythonMIT020

jbrowse

slowkow's personal branch of A modern genome browser in JavaScript

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knitr

A general-purpose tool for dynamic report generation in R

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MUDAN

Multi-sample Unified Discriminant ANalysis

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Language:PythonGPL-3.0030

propr

An R package to calculate proportionality between vectors of compositional data

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QuaternaryProd

An R package for computing the Quaternary Dot Product Scoring Statistic for signed and unsigned causal graphs.

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rcpp-gallery

Source code for the Rcpp Gallery website

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Rtsne

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

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scCloud

scCloud workflows

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soy-rtms

Computational analysis of retrotransposon-associated minisatellite DNAs in the soybean genome

Language:Perl030

tomahawk

Fast genetics in large-scale human cohorts

Language:C++MIT030

vim-slime

A vim plugin to give you some slime. (Emacs)

Language:Vim ScriptMIT020