Kamil Slowikowski's repositories
awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
allelefrequencies
📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
covid-stats
New daily Covid cases and deaths in USA. Data from usafacts.org
slowkow.com
Personal website.
pubmed-pairs
✌️ Search PubMed for each pair of terms from two lists.
actions
GitHub Actions for the R community
saturation
:sponge: Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
milwaukee-weather
Use Github Actions to automatically update a weather graph every day
blog
Source code of my personal blog
symphony
Efficient and precise single-cell reference atlas mapping with Symphony
MWNN
Multi-modal Weighted Nearest Neighbors
rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
presto
Fast Wilcoxon and auROC
velocyto.R
RNA velocity estimation in R
harmony
Scalable integration of single cell RNAseq data for batch correction and meta analysis
demuxEM
Demultiplexing cell/nucleus hashing data for single-cell genomics
pegasusio
pegasus io module for reading/writing single-cell genomics data