slowkow / harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

https://portals.broadinstitute.org/harmony/

slowkow/harmonypy Issues

Will the latest R harmony updates be propagated to the harmonypy
Updated 3 months ago1
Error in running large dataset
Closed 5 months ago2
AttributeError: 'NoneType' object has no attribute 'split'
Closed 7 months ago5
Reference mapping option
Closed 9 months ago2
Results not reproducible
Closed a year ago12
sklearn.cluster.KMeans issue with kmeans_single() and threadpool_limits()
Closed a year ago4
Unique key is not in pandas describe
Closed a year ago3
Add converged status to harmony object
Closed a year ago1
Build changes have broken Conda install
Closed 2 years ago1
Try filprofiler
Updated 2 years ago1
Runharmony with R and run_harmony with Python produced different results
Closed 2 years ago1
Harmony with two or more covariates
Closed 2 years ago3
ValueError: operands could not be broadcast together with shapes
Closed 2 years ago7
Running multiple instances of the same variable in vars_use.
Closed 2 years ago5
Feature request: plot convergence
Closed 2 years ago1
run harmonypy true_divide error
Closed 3 years ago3
feature request:
Closed 3 years ago2
How to get the result after running harmony?
Closed 3 years ago2
ValueError: operands could not be broadcast together
Closed 3 years ago1
How to cite this work?
Closed 3 years ago2
Question re variance explained from harmony-corrected components
Closed 4 years ago4
Harmonypy results with anndata
Closed 4 years ago4
Error when trying to run Harmony with multiple covariates
Closed 4 years ago3
Failed to set number of max iterations to more than 10
Closed 4 years ago2