Christian Dallago's repositories
bio_embeddings
Get protein embeddings from protein sequences
git-inspector
Automatize reporting for multiple repositories using https://github.com/ejwa/gitinspector
cog-examples
Some models defined with Cog to show you how it works
dead_easy_blog
I was frustrated with all the blog stuff out there, so I wrote my own (exactly what you should not do!)
deep-chain-apps
A library for deploying App on deepchain.bio
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
grounding-search
A biological entity grounding search service
IPI_to_UniProt
Simple IPI to UniProt Accession (first hit) conversion
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
nightingale
Data visualisation web components for the life sciences.
ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
rootstock
Clone me to create your Manubot manuscript
TMbed
Transmembrane proteins predicted through Language Model embeddings
uniprot_subcellular_location_extraction
Extract subcellular location of any protein query on UniProt
vq-vae-2-pytorch
Implementation of Generating Diverse High-Fidelity Images with VQ-VAE-2 in PyTorch