sacdallago

bio_embeddings

Get protein embeddings from protein sequences

biotrainer

embed.predictprotein.org

deeploc_redo

git-inspector

Automatize reporting for multiple repositories using https://github.com/ejwa/gitinspector

cellmap

Protein localization and protein-protein interaction visualization tool developed in JavaScript

consurf_extractor

embed.protein.properties

mecu

TPCA data analysis tool

nCoV

protein

sacdallago.github.io

tum_csd

bed_management_frontend

cog-examples

Some models defined with Cog to show you how it works

complexes.protein.properties

dead_easy_blog

I was frustrated with all the blog stuff out there, so I wrote my own (exactly what you should not do!)

deep-chain-apps

A library for deploying App on deepchain.bio

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

disorder_from_disprot

EVcouplings

Evolutionary couplings from protein and RNA sequence alignments

grounding-search

A biological entity grounding search service

IPI_to_UniProt

Simple IPI to UniProt Accession (first hit) conversion

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

nightingale

Data visualisation web components for the life sciences.

ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

rootstock

Clone me to create your Manubot manuscript

TMbed

Transmembrane proteins predicted through Language Model embeddings

uniprot_subcellular_location_extraction

Extract subcellular location of any protein query on UniProt

vq-vae-2-pytorch

Implementation of Generating Diverse High-Fidelity Images with VQ-VAE-2 in PyTorch