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Pathway Commons (PathwayCommons)

Pathway Commons

PathwayCommons

Geek Repo

A network biology resource for biological pathway information and software.

Location:Toronto, New York City, Boston, Portland

Home Page:http://www.pathwaycommons.org

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Pathway Commons's repositories

cytoscape-sbgn-stylesheet

View biological networks via Cytoscape.js and sbgn-ml

Language:JavaScriptLicense:MITStargazers:58Issues:12Issues:73

factoid

A project to capture biological pathway data from academic papers

Language:JavaScriptLicense:MITStargazers:27Issues:10Issues:691

semantic-search

A simple semantic search engine for scientific papers.

Language:PythonLicense:MITStargazers:27Issues:14Issues:41

chibe

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

Language:JavaLicense:EPL-1.0Stargazers:13Issues:12Issues:72

grounding-search

A biological entity grounding search service

Language:JavaScriptLicense:MITStargazers:8Issues:8Issues:74

pcviz

Pathway Commons Bio Network Visualizer

Language:JavaScriptLicense:MITStargazers:8Issues:9Issues:40

cpath2

Biological pathway data integration and access platform (Pathway Commons)

Language:JavaLicense:MITStargazers:6Issues:6Issues:312

sbgnml-to-cytoscape

An npm module that converts xml based SBGN files to JSON for Cytoscape.js

Language:JavaScriptLicense:MITStargazers:5Issues:10Issues:20

guide

Resource for pathway analysis and Pathway Commons

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about

Pathway Commons Home Page (/about/)

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app-ui

Web UI for accessing Pathway Commons data

Language:JavaScriptLicense:MITStargazers:2Issues:8Issues:774

CyPath2

Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

Language:JavaLicense:LGPL-2.1Stargazers:2Issues:7Issues:10

drugbank-to-biopax

DrugBank to BioPAX Level3 data converter.

Language:JavaStargazers:2Issues:4Issues:5

factoid-converters

Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats

Language:JavaLicense:MITStargazers:2Issues:9Issues:20

ncbiutils

A wrapper for retrieving records from PubMed

Language:PythonLicense:MITStargazers:2Issues:3Issues:17

ctd-to-biopax

Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.

Language:JavaStargazers:1Issues:3Issues:9

hyper-recent

Hyper-recent article feed

Language:JavaScriptLicense:MITStargazers:1Issues:7Issues:20

mirtarbase-to-biopax

MiRTarBase to BioPAX Level3 data converter.

Language:JavaStargazers:1Issues:3Issues:10

reconx-to-biopax

SBML to BioPAX Level3 converter, specific to the Recon2 data.

Language:JavaStargazers:1Issues:9Issues:1

sifgraph

Modeling and querying support for SIF graphs

Language:JavaLicense:MITStargazers:1Issues:4Issues:1

sifgraph-server

Pathway Commons binary SIF graph web service

Language:JavaLicense:MITStargazers:1Issues:9Issues:3

pathway-abstract-classifier

A tool to classify journal abstracts with pathway content.

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pubmed-dl

Language:PythonLicense:MITStargazers:0Issues:9Issues:11

chilay-sbgn

Chisio Layout (ChiLay) graph layout framework for SBGN

Language:JavaStargazers:0Issues:3Issues:2

classifier-pipeline

A workflow for classifying articles

Language:PythonLicense:MITStargazers:0Issues:2Issues:19

cpath2-client

Language:JavaLicense:MITStargazers:0Issues:9Issues:0

msigdb-to-biopax

MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.

Language:JavaStargazers:0Issues:0Issues:0

pcapi

The Web API Docs App

Language:JavaScriptStargazers:0Issues:4Issues:1

rethinkdb-backup

Enables a client to dump and retrieve data from a RethinkDB instance

Language:JavaScriptLicense:MITStargazers:0Issues:6Issues:9

rethinkdb-docker

A Docker image that provides a RethinkDB database

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