robsyme

COSMO

COSMO: COrrection of Sample Mislabeling by Omics

features

Custom dev container features

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

devcontainers.github.io

Web content for the development containers specification.

dna

DNAseq pipelines

fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

flagship-workshop

Demonstration workflow for Flagship

getorg

Testing getorganelle

moderna-demo

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nextflow

A DSL for data-driven computational pipelines

nextflow-feature

nf-co.re

Code and files for the main nf-core website.

nf-gwas

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

nf-tempdemo

Temporary repository for testing missing main.nf behavior

nf-test

A repository for various tests and minimal-reproducible-example workflows

nf-validation

Params validation plugin for Nextflow pipelines

patterns

A curated collection of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html

perSVade

perSVade: personalized Structural Variation detection

phoenix-nftower

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

s3-test-workflow

Dummy repository for testing

schema-demo

Demonstration of Minimal(ish) handling of nextflow schema

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

simpleaf

A rust framework to make using alevin-fry even simpler

temporary-empress

Temporary repository for debugging empress ticket

testproject

Just a dummy project to test something

tools

Python package with helper tools for the nf-core community.

training

Nextflow training material

wf-metagenomics

Metagenomic classification of long-read sequencing data