robsyme

modules

Minimal nf-core style modules repository

20231211_ticket_4242

airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

branch-testing

fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

funcscan

(Meta-)genome screening for functional and natural product gene sequences

java-ipld-cbor

A Java implementation of the IPLD cbor format

manta-testing

metatdenovo

minimal

multi-package-containers

Testing building mulled containers for multi-requirement tools.

mythical.fish

My portfolio, built using Gatsby, PostCSS, Tailwind, and PurgeCSS. 🐠

nextflow

A DSL for data-driven computational pipelines

nextflow-example

nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

nf-hello

Nextflow plugin implementation skeleton

nf-quilt

nf-test

A repository for various tests and minimal-reproducible-example workflows

nf-weblog

Implement weblog plugin for Nextflow

nonroot-main-nf

quiltcore-java

Java implementation of the Quilt API

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

slas-demo

Demonstration repository for SLAS 2024

smrnaseq

A small-RNA sequencing analysis pipeline

test-branching

Test repo for debugging Tower behaviour

tostadas

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

tower-cli

Nextflow Tower CLI tool

waitlift

A small application for stress testing the filesystem

wf-clone-validation

xenome

Dummy repo for stress testing fusion with xenome