Robert Syme's repositories
nf-repeatmasking
Nextflow workflow for automatic repeat detection, classification and masking
docker-sge
Dockerfile to build a container with SGE installed
nf-annotate
Fungal genome annotation pipeline
docker-REPET
The REPET package in a container.
mitehunter
A clone of MITE-Hunter from Yujun Han and Susan Wessler - used for bugfixing
aletheia-app
Alethia peer to peer publishing platform
asciinema-player
Web player for terminal session recordings ⏩
babble
A hashgraph implementation written in Go
brohrer.github.io
Public web page for brohrer
docker-apollo
:whale: Apollo 2.X Docker Image
docs
Documentation for Polymer
GenomeFeatureComponent
Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component
iron-flex-layout
Style mixins for cross-platform flex-box layouts
markerdev
A nextflow pipeline for developing markers that differentiate one set of individuals from another.
nf-nucmercoverage
A humble nextflow pipeline to compare the coverage of some reference genome(s) by nucmer matches of some other genomes. Produces svg (gg)plots.
org-journal
A simple org-mode based journaling mode
OrthoFinder
Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
Parastagonospora_nodorum_SN4
Storage and edit history for ACNFP gene models.
Parastagonospora_nodorum_SN79
Storage and edit history for ACNFP gene models.
progressiveCactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
resbaz2017
Website for ResBaz 2017
ripsaw
Segment the genome according to dinucleotide frequencies
SWC-CIC
Website for Software Carpentry Workshop at Curtin
turbo-octo-happiness
Observations about interplenetary adventures
VelvetOptimiser
:chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.