Robert Syme's repositories
nf-repeatmasking
Nextflow workflow for automatic repeat detection, classification and masking
docker-sge
Dockerfile to build a container with SGE installed
nf-annotate
Fungal genome annotation pipeline
docker-REPET
The REPET package in a container.
mitehunter
A clone of MITE-Hunter from Yujun Han and Susan Wessler - used for bugfixing
aletheia-app
Alethia peer to peer publishing platform
asciinema-player
Web player for terminal session recordings ⏩
babble
A hashgraph implementation written in Go
brohrer.github.io
Public web page for brohrer
docker-apollo
:whale: Apollo 2.X Docker Image
docs
Documentation for Polymer
GenomeFeatureComponent
Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component
hal
Hierarchical Alignment Format
iron-flex-layout
Style mixins for cross-platform flex-box layouts
markerdev
A nextflow pipeline for developing markers that differentiate one set of individuals from another.
nf-nucmercoverage
A humble nextflow pipeline to compare the coverage of some reference genome(s) by nucmer matches of some other genomes. Produces svg (gg)plots.
org-journal
A simple org-mode based journaling mode
OrthoFinder
Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
Parastagonospora_nodorum_SN4
Storage and edit history for ACNFP gene models.
Parastagonospora_nodorum_SN79
Storage and edit history for ACNFP gene models.
progressiveCactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
resbaz2017
Website for ResBaz 2017
ripsaw
Segment the genome according to dinucleotide frequencies
slide-deck
Polymer elements that act like impress.js presentations.
SWC-CIC
Website for Software Carpentry Workshop at Curtin
turbo-octo-happiness
Observations about interplenetary adventures
VelvetOptimiser
:chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.