robsyme

nextflow-annotate

Workflows I find helpful for fungal genome annotation

COSMO

COSMO: COrrection of Sample Mislabeling by Omics

features

Custom dev container features

alphafold-nf

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

breakerbreaker

devcontainers.github.io

Web content for the development containers specification.

flagship-workshop

Demonstration workflow for Flagship

funcscan

(Meta-)genome screening for functional and natural product gene sequences

getorg

Testing getorganelle

metatdenovo

moderna-demo

mythical.fish

My portfolio, built using Gatsby, PostCSS, Tailwind, and PurgeCSS. 🐠

nextflow-feature

nf-co.re

Code and files for the main nf-core website.

nf-gwas

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

nf-tempdemo

Temporary repository for testing missing main.nf behavior

nf-validation

Params validation plugin for Nextflow pipelines

phoenix-nftower

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

s3-test-workflow

Dummy repository for testing

schema-demo

Demonstration of Minimal(ish) handling of nextflow schema

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

sgnf

SocialGene's Nextflow Pipeline

simpleaf

A rust framework to make using alevin-fry even simpler

takera-demo

Demonstration repository

temporary-empress

Temporary repository for debugging empress ticket

training

Nextflow training material

wf-metagenomics

Metagenomic classification of long-read sequencing data