robsyme

busco

https://gitlab.com/ezlab/busco

CBW_HTseq_module5

CBW HT-seq workshop module 5 on SV variants calling

ANCHOR

Anchor is a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples.

bioinformatics-ca.github.io

not used anymore

bioinformaticsdotca.github.io

Repo for student website

bioruby-mummer

Help for working with the output of the .delta files produced by nucmer and promer

CBW_HTseq_module2

Module 2 materials for Informatics on High Throughput Sequencing Data

dna

DNAseq pipelines

dnaseq_wdl

HTG_2021

CBW’s High Throughput Genomics Analysis 2021

methylKit

R package for DNA methylation analysis

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

micm-2020-demo

Demonstration repository for dummy code

micm-workshop-demo

A demonstration repository for developing Nextflow pipelines.

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nextflow-bug-report

Tiny repository to demonstrate a potential bug in nextflow

nf-ipfs

patterns

A curated collection of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html

perSVade

perSVade: personalized Structural Variation detection

reference

The Rust Reference

rust-by-example

Learn Rust with examples (Live code editor included)

rustalind

Documenting the process of learning rust by implementing exercises from http://rosalind.info

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

spacemacs

A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!

spotify-tui

Spotify for the terminal written in Rust 🚀

testproject

Just a dummy project to test something

tools

Python package with helper tools for the nf-core community.

Trinotate

Trinotate source code

website

qri.io static site

website-1

Personal blog and website, using Hugo - a static website generator in Golang.