Rob Patro's repositories
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
arewebioyet.github.io
Rust in bioinformatics and computational biology
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bioconda-recipes
Conda recipes for the bioconda channel.
cmsc423_f21_project1_sample
Some sample input/output scripts for project
DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
gccontent-benchmark
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
keep-a-changelog
If you build software, keep a changelog.
kseqpp
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
seurat-wrappers
Community-provided extensions to Seurat
SingleCellExperiment
:crab: Oxidized Single Cell Experiment
strobemers
A repository for generating strobemers and evalaution