rob-p

statrs

Statistical computation library for Rust

cmsc423_f21_project2_sample

CMSC423_F22_A1_sample

scRNA-tools

Table of software for the analysis of single-cell RNA-seq data.

arewebioyet.github.io

Rust in bioinformatics and computational biology

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioconda-recipes

Conda recipes for the bioconda channel.

CMSC423_F21

cmsc423_f21_project1_sample

Some sample input/output scripts for project

cmsc423_f21_project3_cpp_sample

cmsc423_f21_project3_java_sample

cmsc423_f21_project3_sample_data

cmsc423_f21_project5_sample_data

CMSC423_F22_A0_sample

CMSC423_F22_A0_sample_rust

CMSC423_F22_Project1_sample_data

CMSC423_F22_Project2_Sample

contig-connectors

DropletUtils

Clone of the Bioconductor repository for the DropletUtils package.

gccontent-benchmark

Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)

keep-a-changelog

If you build software, keep a changelog.

kseqpp

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

rust_bio_bwt_bug

seurat-wrappers

Community-provided extensions to Seurat

SingleCellExperiment

:crab: Oxidized Single Cell Experiment

split2samples

BD rhapsody sample splitting preprocessing

SPLITseq

strobemers

A repository for generating strobemers and evalaution