Rob Patro's repositories
projects
a list of all projects
chobo-shl
A collection of single-header C++11 libraries by Chobolabs
cellrangerRkit
Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
clipp
easy to use, powerful & expressive command line argument parsing for modern C++ / single header / usage & doc generation
klib
A standalone and lightweight C library
tximeta
Import transcript abundances with automagic population of metadata
spline
c++ cubic spline library
BBHash
Bloom-filter based minimal perfect hash function library
sdsl-lite
Succinct Data Structure Library 2.0
gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
Sux
Implementing Succinct Data Structures from Sebastiano Vigna(http://sux.di.unimi.it)
homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
continuous_analysis
Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
continuous_analysis_rnaseq
Example of how continuous analysis can be used for RNA-Seq differential expression.
fcseqtk
Fork of SeqTK adapted for FusionCatcher
daft
Render some probabilistic graphical models using matplotlib
COMBINE-lab.github.io
Lab website
sparsepp
A fast, memory efficient hash map for C++
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
linuxbrew-slides
Linuxbrew and Homebrew-Science
polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.