rob-p

Rob Patro's repositories

mcflow

An implementation of implicit curvature flow as described in "Implicit Fairing of Irregular Meshes using Diffusion and Curvature Flow" by Desbrun et al.

Language:C++NOASSERTION20 70

cpp11fun

A small set of examples demonstrating features of C++11

Language:C++7 60

ScalaIntro

A small set of Scala examples & links for a brief Scala introduction given at UMD

3 50

memtest

Memory usage for simple tasks in different languages

Language:Python2 30

PARANA2

Parsimonious Ancestral Reconstruction And Network Analysis

Language:Scala100

robprog

My adaptation of ezETAProgressBar for C++11

Language:C++MIT100

slimgraph

A graph library for scala

Language:Scala1 40

course

Source code for the applications presented in the course "Geometry Processing with Discrete Exterior Calculus"

Language:C++000

FacultyHiringPaper

A repository to test out some thoughts / ideas related to the paper "Systematic inequality and hierarchy in faculty hiring networks"

MIT030

GHOST

Global Network Alignment using Multiscale Spectral Signatures

Language:Scala040

GHOST-CPP

Rewriting (at least some) of GHOST in C++

Language:C++000

Fork of the jellyfish kmer counter. Here is the description copied from their site: JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish stats" command. See the documentation below for more details.

Language:C++GPL-3.0030