rob-p

FQFeeder

Self-contained, multi-threaded fasta/q parser

bibget

Generate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.

genomap

A Rust library for storing generic genomic data by sorted chromosome name

ANTISEQUENCE

Rust library for processing sequencing reads.

CMSC423_F22_A1_sample

ggcat

Compacted and colored de Bruijn graph construction and querying

libdivsufsort

A lightweight suffix-sorting library

metagraph

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

CMSC423_F22_A0_sample_rust

CMSC423_F22_A4

CMSC423_F22_A5

CMSC423_F22_Project1_sample_data

CMSC423_F22_Project2_Sample

cmsc423_f22_project3_cpp_sample

cmsc423_f22_project3_java_sample

CMSC423_F22_Project3_sample_data

config_files

cpp_sa_starter_proj

cuttlefish

Building the compacted de Bruijn graph efficiently from references or reads.

essentials

Essential C++ utilities.

kmers

A bit-packed k-mer representation (and relevant utilities) for rust

LaPreprint

📝 A nicely formatted LaTeX preprint template

libdivsufsort-rs

A rust wrapper for libdivsufsort

Mastodon-Bioinformatics

Most simple webapp to bulk follow bioinformatics accounts on Mastodon.

path-tools

A simple rust crate for more conveniently performing some operations with paths

pthash

Fast and compact minimal perfect hash functions in C++.

split2samples

BD rhapsody sample splitting preprocessing

sshash

A compressed, associative, exact, and weighted dictionary for k-mers.

test-ureq

tximport

Import and summarize transcript-level estimates for gene-level analysis