rob-p / CMSC423_F22_Project1_sample_data

CMSC423_F22_Project1_sample_data

The file names encode the parameters used. Specifically, to generate reads_100_5_0.30.fa (and the corresponding .stats), the simulator was run on genome.fa with read length 100, expected coverage 5, and $\theta = 0.3$. To reconstruct recon_100_5_0.30.fa the assmebler was run with the input set of reads and min overlap of 30.

To generate reads_200_40_0.20.fa (and the corresponding .stats), the simulator was run on genome_small.fa with read length 200, expected coverage 40, and $\theta = 0.2$. To reconstruct recon_small_200_40_0.20.fa the assmebler was run with the input set of reads and min overlap of 40 (i.e. $\theta * 200$).