QIIME 2

qiime2

Official repository for the QIIME 2 framework.

docs

q2-feature-classifier

QIIME 2 plugin supporting taxonomic classification

q2cli

Command line interface for QIIME 2

q2galaxy

Generate Galaxy tool descriptions automatically from QIIME 2 actions.

q2view

A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

q2-types

cancer-microbiome-intervention-tutorial

JupyterBook for QIIME 2 FAES January 2022 workshop

q2-longitudinal

QIIME 2 plugin for paired sample comparisons

q2-sample-classifier

QIIME 2 plugin for machine learning prediction of sample data.

vm-playbooks

Ansible playbooks for QIIME 2 environments

q2-vsearch

vsearch plugin for QIIME 2

q2-diversity

q2-fmt

Plugin for analysing the efficacy of fecal microbiota transplants

q2templates

Design template package for QIIME 2 Plugins

q2-taxa

q2-feature-table

QIIME 2 plugin supporting operations on feature tables.

sphinx-ext-qiime2

galaxy-tools

Official QIIME 2 tools for Galaxy

q2-stats

q2-vizard

The first choice of wizard lizards for interactive, generalized microbiome data visualization!

resources

Source for QIIME 2 Resources page.

distributions

q2-diversity-lib

action-library-packaging

data302

q2-demux

q2-quality-filter

Quality filtering for QIIME2

q2view-gallery

qiime-landing

An Example QIIME landing page