Giters
qiime2
/
q2-vsearch
vsearch plugin for QIIME 2
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Stargazers:
6
Watchers:
12
Issues:
38
Forks:
19
qiime2/q2-vsearch Issues
BUG: passing one or more filtering parameters to `dereplicate-sequences` results in error
Updated
2 months ago
Expose `FeatureMap` data when clustering
Updated
8 months ago
Comments count
1
ENH: add support for the different versions of `uchime_denovo` within vsearch
Updated
3 months ago
Comments count
1
Rename `join-pairs` to `merge-pairs`
Closed
2 years ago
Comments count
7
Please support vsearch 2.13 or newer (Debian Packaging)
Closed
9 months ago
Comments count
3
merge fastq_stats_* visualizers into a single action
Closed
4 years ago
Comments count
1
Missing a length filter cross-reference in `cluster-features-*` actions
Closed
4 years ago
Comments count
3
derep - expose minseqlength parameter
Closed
2 years ago
vsearch cluster-features-de-novo fatal error
Closed
5 years ago
Comments count
1
BUG: derep-seqs produces mismatched feature IDs
Closed
2 years ago
Comments count
4
ENH: `dereplicate-sequences` expose parameter to disable sequence hash IDs
Updated
2 years ago
Comments count
8
ENH: output closed-ref OTU picking stats
Updated
4 years ago
Comments count
2
Add Citations
Closed
6 years ago
Set –fasta_width 0 on relevant actions
Closed
4 years ago
Comments count
13
expose --minuniquesize for dereplicating
Closed
2 years ago
Pass `--threads` to `join-pairs`
Closed
5 years ago
Missing deps in conda recipe
Closed
6 years ago
performance issues with `cluster-features-open-reference`
Updated
4 years ago
feature ids in "chimeras" FeatureData[Sequence] artifacts are incorrect
Closed
3 years ago
add vsearch all-pairwise-alignments pipeline
Updated
4 years ago
add vsearch database search method
Updated
4 years ago
Comments count
1
Add support for paired-end joining
Closed
7 years ago
add method for chimera checking
Closed
6 years ago
add support for ``--derep_prefix`` when we support vsearch 2.1.1
Closed
6 years ago
Comments count
10
add plugin description
Closed
7 years ago
add cluster-features-open-reference
Closed
7 years ago
add dereplicate_sequences
Closed
7 years ago
add cluster-features-closed-reference
Closed
7 years ago
Comments count
1
expand tests of `.uc` format parser
Updated
4 years ago
only feature ids present in the table should be clustered
Closed
7 years ago
Comments count
1
add cluster-sequences-open-reference
Closed
9 months ago
add cluster-sequences-closed-reference
Closed
9 months ago
add cluster-sequences-denovo
Closed
9 months ago
add taxonomy classification method
Closed
7 years ago
Comments count
2
add unit tests
Closed
7 years ago
Comments count
1
add install instructions to readme
Closed
7 years ago
include dependencies in setup.py
Closed
7 years ago
cluster-features id parameter should specify range
Closed
7 years ago