qiime2 / docs

https://docs.qiime2.org

qiime2/docs Issues

Following installation instructions results in wget error on macOS
Closed 4 months ago6
MAINT: `cluster-features-denovo` tutorial needs new `--p-strand` param added
Updated 4 months ago2
Describe column name case insensitivity in metadata tutorial
Updated 4 months ago
add link to installation docs suggesting to search the forum when troubleshooting
Updated 8 months ago
BUG: broken link in importing data tutorial
Closed 9 months ago3
Search is broken
Closed 9 months ago
Need URL to Latest Qiime2 Docs
Closed 10 months ago2
Broken Link to CASAVA 1.8 description in importing tutorial
Closed 10 months ago1
migrate (or just remove) "Developing a QIIME 2 plugin" page
Closed a year ago1
Tiny typo on QIIME 2 Cancer Microbiome Intervention Tutorial main page
Closed a year ago2
Support generating docs for Semantic Types, Formats, and Transformers
Updated 2 years ago
Installation through `mamba`
Updated 3 years ago2
ENH: Filtering Tutorial to include SampleData
Updated 3 years ago
OTU clustering tutorial: closed-ref description is outdated
Closed 3 years ago1
Update the read joining tutorial
Closed 3 years ago
PD Mice Typo:
Closed 3 years ago3
Newer versions of pip are problematic when installing q2studio
Closed 4 years ago2
PM tutorial: Taxonomic classification results are the same before and after retraining the classifier
Updated 4 years ago2
Remove observed otus/observed features note from moving pictures
Closed 4 years ago
Missing q2-diversity-lib entry in install index
Closed 4 years ago
TODO: wire up sphinx-ext-qiime2
Closed 4 years ago
Including an explanation in tutorials of DADA2/feature-classifier long run times & job splitting
Updated 4 years ago
VM guides - specify user accounts present
Updated 4 years ago
FMT tutorial improvements.
Updated 4 years ago
Docs need to be fixed for Shannon diversity. should include evenness
Updated 4 years ago
Document inconsistencies between view tool results and q2view
Closed 4 years ago
Read-Joining tutorial data in outdated SingleEndFastqManifestPhred33 format
Closed 4 years ago1
QIIME 2 Protocols Paper Additions
Closed 4 years ago
Renaming sample metadata file in the moving pictures tutorial?
Updated 4 years ago
Add MultiplexedBarcodeInSequence to import tutorial
Closed 4 years ago1
Organize tutorials by theme
Updated 4 years ago3
Revise q2-gneiss tutorial to reflect removed visualizers
Closed 4 years ago
parkinson's mouse tutorial should document `fragment-insertion filter-features` step after `fragment-insertion sepp`
Updated 5 years ago2
Plugin Directory Extension is Suddenly Slow
Closed 5 years ago4
MAINT: Retrain feature classifiers for sklearn 0.20.3
Closed 5 years ago1
New 16s Tutorial for Workshop
Closed 5 years ago6
"Modernize" metadata headers in tutorial metadata files
Closed 5 years ago2
A deprecated option of demux in "Moving Pictures" tutorial, 2019.4
Closed 5 years ago2
BUG: plugin API citations auto-format citation title capitalization
Updated 5 years ago1
overview tutorial phylogeny flowchart contains error
Closed 5 years ago
UX/UI BUG: conda wget broken?
Closed 5 years ago
broken link in installation instructions
Closed 5 years ago6
sample-classifier tutorial: set random states and/or stratify
Closed 6 years ago
q2-longitudinal: improve description of first-differences/distances
Closed 6 years ago
FMT tutorial: improve longitudinal and other questions
Updated 6 years ago
ENH: provide links to command-line tutorials in the supplementary resources
Updated 6 years ago
sample-classifier tutorial: update to describe pipelines etc
Closed 6 years ago
overview tutorial: add `subsample` to diversity flowchart
Closed 6 years ago
feature-classifier tutorial: clarify that reference seqs and taxonomy should be paired
Closed 6 years ago
Update export tutorial to match new q2cli API
Closed 6 years ago1