qiime2 / q2-quality-filter

Quality filtering for QIIME2

qiime2/q2-quality-filter Issues

Discuss combining actions with q2-quality-control
Updated a year ago1
Remove deprecated "q_score_joined" method
Closed 4 years ago
quality filtering of paired end reads
Closed 6 years ago1
New Feature: filter barcodes/reads based on barcode quality scores
Updated 6 years ago
Add Citations
Closed 6 years ago
QualityFilterStatsFmt -> Metadata transformer breaks on numeric IDs
Closed 6 years ago
Explore parallelization
Updated 4 years ago
make `QualityFilterStats` viewable as `qiime2.Metadata`
Closed 7 years ago2
add support for SampleData[PairedEndSequencesWithQuality]
Closed 7 years ago
output semantic type of q-score is incorrect
Closed 7 years ago
add support for q-score filtering of `SampleData[JoinedSequencesWithQuality]`
Closed 7 years ago
Add the ability to reverse complement sequences before writing them
Updated 4 years ago11
would a `filter-fasta` method be appropriate in this plugin?
Closed 3 years ago1
add `description` and `short_description` to instantiation of the `Plugin` object
Closed 7 years ago
add coveralls to travis
Closed 3 years ago1
Sample IDs which are entirely numeric can get corrupted
Closed 7 years ago
drop q2-dummy-type from travis.yml
Closed 8 years ago
expand test suite
Closed 8 years ago1
set up travis
Closed 8 years ago1
visualize-stats suggestions
Closed 8 years ago
add bokulich nature methods citation
Closed 8 years ago
more descriptive name for the ``basic`` method?
Closed 8 years ago
have the results of this quality filter been compared to QIIME 1 split_libraries_fastq?
Closed 8 years ago2
parameter name suggestions
Closed 8 years ago1
add parameter-specific help text
Closed 8 years ago
increase minimum-quality default to 19?
Closed 8 years ago2
add website in plugin_setup.py
Closed 8 years ago