protViz / prora

running ora or gsea on lists of proteinidentifiers

protViz/prora Issues

More GSEA toolboxes on Bioconductor
Updated 4 years ago
Use annotationHub to map to genesets
Updated 4 years ago
ID mapping for sigora
Updated 4 years ago1
Vignette building failed during fgcz installation
Updated 4 years ago3
Create a new markdown where you use sigora api
Closed 4 years ago1
Get Sigora working for all organisms and various gene signature repositories
Updated 4 years ago
get the vignette working with BiocStyle::pdf_document
Closed 4 years ago
Improve README.md by adding installation instructions
Closed 4 years ago1
specify output object with visualizations
Updated 5 years ago
msigdbr - gene set database
Updated 5 years ago
integrate fgsea
Updated 5 years ago
integrate Enrichr
Updated 5 years ago
integrate topGo
Updated 5 years ago
Add support for ID mapping with UniProt
Closed 5 years ago2
Have a look at mogsa
Updated 5 years ago
random seed for webgestalt
Updated 4 years ago
error when running GSEA.Rmd
Closed 5 years ago3
store GSEA_res_sep table with other results.
Closed 5 years ago1
sigoraWrappR not working - missing function getSymbolFromSwissprotID
Closed 5 years ago
@example in makeGPS_wrappR - update exampleSymbols to uniprot
Closed 5 years ago
Package build fails
Closed 5 years ago
Mappings
Updated 5 years ago1
use dplyr::rename instead of colnames() <- c("",...)
Closed 5 years ago
use @importFrom instead of @import
Closed 5 years ago
When executing Run_MQTwoGroup_WebgestaltR.R
Closed 5 years ago
Run_sigora.R fails with error when rendering sigora.Rmd
Closed 5 years ago1