protViz / prora

running ora or gsea on lists of proteinidentifiers

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Run_sigora.R fails with error when rendering sigora.Rmd

wolski opened this issue · comments

When executing:

Run_sigora.R

there is an error when it tries to render
sigora.Rmd

Quitting from lines 136-137 (sigora.Rmd)
Error in colnames<-(*tmp*, value = *vtmp*) :
attempt to set 'colnames' on an object with less than two dimensions

The error happens in the function

sigora_upsetR(sigora_res = res$sigora, GPStab)

Seems like you are passing the wrong data structure to sigora_res sigora_upsetR.

I could reproduce the error and fix the input format.