ID mapping for sigora
lisajohanna opened this issue · comments
Get sigora working for various ID types.
MSIGDB (lisa)
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using Uniprot https://github.com/protViz/fgcz.gsea.ora/blob/master/R/make_ids_uniprot.R
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use MSIGDB r package to map ENTREZ ids to genesets from MSIG and get it running with sigora.
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dplry::inner_join(uniprot_entrez, msig_DB, by ="entrez_ID")
Is sigora::idmap used when ID's in query list map those in gpsRepo?
What is the level argument in the sigora function and how does work? How are hierarchical gpsRepo's created?