When executing Run_MQTwoGroup_WebgestaltR.R
wolski opened this issue · comments
The script fails when calling webGestaltWrapper
> webGestaltExample <-
+ webGestaltWrapper(
+ grp2 = grp2,
+ enrichDatabase = enrichDatabase,
+ organism = organism,
+ se_threshold = 1.5,
+ nrNas = 5,
+ method = "complete"
+ )
protein_cluster_1.txt was written to output/ORA_inputFiles
protein_cluster_2.txt was written to output/ORA_inputFiles
Error: 'WebGestaltRBatch' is not an exported object from 'namespace:WebGestaltR'
On this occasion, replace grp2 argument with
quant_data and nclust
in webGestaltWrapper argument list.