protViz / prora

running ora or gsea on lists of proteinidentifiers

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Improve README.md by adding installation instructions

wolski opened this issue · comments

Use Case : A user with limited R experience needs to install the fgcz.gsea.ora package on his computer, or wants to install it on the computer in the FGCZ Biofinformatics room.
Provide a description in the README.md file how to achieve it or why it is not possible.
Also vignettes should be build during installation.

Please also have a look at:
https://fgcz-genomics.uzh.ch/auth-sign-in
and if it can be used.

At the moment we are getting:

install.packages("remotes")
remotes::install_github("protViz/fgcz.gsea.ora")

Warnung in file(con, "w")
  kann Datei '\\fgcz-xdrive/Users/wolski/My Documents/R/win-library/3.4/remotes/doc/index.html' nicht öffnen: No such file or directory
Error in file(con, "w") : kann Verbindung nicht öffnen
ERROR: installing vignettes failed
* removing '\\fgcz-xdrive/Users/wolski/My Documents/R/win-library/3.4/remotes'
In R CMD INSTALL

You might find the following links usefull:

https://rdrr.io/github/protViz/fgcz.gsea.ora/#vignettes
https://stackoverflow.com/questions/15170399/change-r-default-library-path-using-libpaths-in-rprofile-site-fails-to-work

Please also have a look at:
https://fgcz-genomics.uzh.ch/auth-sign-in

and if it can be used instead.

Also add info, how to install it that the vignettes are build and installed. see (r-lib/devtools#1896)