MOLGENIS - open source solutions for scientific data

molgenis-emx2

MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

GAP

Genotyping Array Pipeline

molgenis-r-qc

molgenis-service-armadillo

Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

molgenis-r-datashield

Armadillo implementation of DSI to be DataSHIELD ready, part of the MOLGENIS suite

molgenis-r-armadillo

Client to manage shared files in the MOLGENIS Armadillo suite from R

vip

Variant Interpretation Pipeline

NGS_RNA

molgenis-py-bbmri-eric

MOLGENIS Python tooling for BBMRI-ERIC

vite-plugin-inline

Vite plugin that embeds .js and .css as base85 data

ds-tidyverse-client

ds-tidyverse

projects-solve-rd

All things related to maintaining the RD3 database

projects-rd-recon4imd

NGS_Automated

take-it-easyconfigs

sc-MetaBrain-consortium

metabrain

Various scripts to process RNAseq data for brain eQTL analysis

ansible-pipelines

projects-rd-erns

projects-rd-dashboards

ngs-utils

Collection of notes and scripts related to NGS

ConcordanceCheck

molgenis-tools-commander

A command line interface for MOLGENIS

NGS_DNA

NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC

PGx-pipeline

Farmacogenetics pipeline

molgenis-projects

Repository containing settings, configuration files, and public data for different MOLGENIS project servers

Graph2VR

Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality.

molgenis-r-auth

Discover and authenticate against an OpenID server from R

systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool