MOLGENIS - open source solutions for scientific data's repositories
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
cluster-utils
Collection of utilities / helper scripts to make life easier on our HPC clusters.
vite-plugin-inline
Vite plugin that embeds .js and .css as base85 data
vip-inheritance-matcher
annotates VCF samples with denovo and possible compound flags and matching inheritance modes
vip-decision-tree
Decision tree module for the Variant Interpretation Pipeline (vip)
vip-report-api
Report API for Variant Call Format (VCF) Report templates
vip-report-vcf
TypeScript VCF library with support for both reading and writing
gdi-localportal
GDI implementation of Local portal: a Molgenis connected to REMS, with Keycloak and Postgres
PGx-pipeline
Farmacogenetics pipeline
molgenis-py-cohorts-etl
Python lib containing scripts to control data flow from staging env to live catalogue
molgenis-app-eucan-connect
This is the user interface for Eucan Connect. Here you can find studies/cohorts within multiple catalogues.
molgenis-app-lifelines-webshop
App to explore and create data order for lifelines biobank
molgenis-projects
Repository containing settings, configuration files, and public data for different MOLGENIS project servers
molgenis-py-client
A Python client for the MOLGENIS REST API
molgenis-py-eucan-connect
MOLGENIS Python tooling for the EUCAN-Connect Catalogue
molgenis-r-datashield
Armadillo implementation of DSI to be DataSHIELD ready, part of the MOLGENIS suite
vip-utils
Shared utils and resources for VIP modules and tools