MOLGENIS - open source solutions for scientific data

CoNVaDING

Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data

scRNA-seq

gavin

Gene specific calibrations for CADD scores based on ClinVar, ExAC and SnpEff

ontocat

OntoCat - Ontology Common API Tasks

molgenis-imputation

Rapid generation of genetic imputation scripts for grid/cluster/local environments

molgenis-tools-emx-downloader

Stand alone tool to download data in EMX format from molgenis servers

molgenis-r-client

MOLGENIS R client package

molgenis-ui-filter

Filter components

VaSeBuilder

Validation Set Builder

vcf-io

Variant Call Format (VCF) reader and writer Java library

covid19_prs_time

ds-upload

Upload tools for DataSHIELD backends

league-of-robots

Code and configs for deploying (virtual) HPC clusters.

mg-core

Molgenis Frontend Core [POC]

molgenis-app-bbmri-nl

molgenis-js-catalogue-exporter

Exports an EMX model from the MOLGENIS catalogue suite

molgenis-py-lifelines-transform

molgenis-tools-airflow

DAGS configuration for Airflow

molgenis-ui-footer

Footer component of MOLGENIS

molgenis.github.io

mvl-vcf-converter

Converts Managed Variant Lists to VCF (Variant Call Format) files

NGS_CNV

CNV calling pipelines based on NGS data

ontologies

General repository to contain ontologies

pgs_based_sample_mix-up_correction

RD3_database

s3.file.resourcer

R package to access S3 compatible object stores as resources

TIMID

Refreshing data TIMID project

vibe-suppl

Variant Interpretation using Biological Evidence - supplemental files

vkgl-vcf-converter

Converts http://molgenis.org/vkgl downloads to VCF (Variant Call Format) files

w3id.org

Website source code for w3id.org.