maxibor

conda-package-publish-action

Github Action to deploy conda package to Anaconda repository

protinter

Protein interaction calculator

kraken-nf

Simple Kraken2 Nextflow pipeline

bamAlignCleaner

Removes unaligned references in BAM alignment file

dada2-nf

dada2 nextflow pipeline

test

admix

an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.

analysis-project-structure

Template and documentation on how to structure bioinformatic componenets of projects

apb

APB : A Project Balloter, not Admission Post-Bac

CheckM

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

cmseq

Set of utilities on sequences and BAM files

eager

A fully reproducible and state of the art ancient DNA analysis pipeline.

fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

gtdb_to_taxdump

Convert GTDB taxonomy to NCBI taxdump format

intro-to-pandas-plotnine

Introduction to data manipulation with Pandas and visualization with Plotnine

kmermaid

k-mer similarity analysis pipeline

madman

Metagenomic Assembly of Ancient DaMaged reads with Nextflow

MPI-SHH-SummerSchool.github.io

This is the summer school website

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nf-co.re

Code and files for the main nf-core website.

nf-humann

A simple nextflow DSL2 pipeline to run humann from fastq files

ngsLCA

pydamage-article

Code and data for reproducing the PyDamage article

pypmml-feedstock

A conda-smithy repository for pypmml.

sam2lca_demo

sam2lca demo for JOBIM2022

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

taxopy

A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers

taxpasta

TAXnomic Profile Aggregation and STAndardisation

test-datasets

Test data to be used for automated testing with the nf-core pipelines

vcfphylo