maxibor

pydamage

Damage parameter estimation for ancient DNA

sam2lca

Lowest Common Ancestor from a SAM/BAM/CRAM alignment file

comp_dnds

Measure evolutionary pressure by efficiently computing dN/dS according to the Nei-Gojobori method

adrsm

Ancient DNA Read Simulator for Metagenomic

microbiome_tutorial

Microbiome analysis tutorial

ncbi-genome-download

Python script for downloading bacterial genomes from NCBI ftp

adnamap

aDNA mapping to multiple genomes

corephylo

core genome phylogenies

DNA_tools

A set of tools to play with/analyze genomics data

test

AMDirT

AncientMetagenomeDir Toolkit

admix

an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.

AMPcombi

For testing out the ampcombi tool for running amp tools.

AncientMetagenomeDir

Repository containing lists of all published ancient metagenome samples (and related)

bioconda-recipes

Conda recipes for the bioconda channel.

configs

Config files used to define parameters specific to compute environments at different Institutions.

coproID

Coprolite host Identification

decOM

🧹🦷 decOM 🧹🦷

gatsby-agora-site-template

ibis

The flexibility of Python with the scale and performance of modern SQL.

intro-to-ancient-metagenomics-book

Introduction to Ancient Metagenomics Book

mag

Assembly and binning of metagenomes

maxibor

maxibor.github.io

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

ophirofox

Une extension pour navigateurs qui permet de lire les articles du monde.fr sur son compte europresse ENS

scihub_linker

taxopy

A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers

taxpasta

TAXnomic Profile Aggregation and STAndardisation

vcfphylo