lpantano

seqcluster

small RNA analysis from NGS data

DEGreport

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

seqbuster

pipeline for the analysis of small RNA data

isomiRs

analyze isomiRs from seqbuster tool

mypubs

creation of methods with the purpose of tools comparison

bcbioSmallRna

R package to analyze data after small RNAseq with bcbio

seqclusterViz

visualization of seqcluster output, try at:

bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis

dummychapter1

Example of package using inst files in the vignette

smrnaseq

Analysis pipeline for small-RNA sequencing data.

cambridge-bio-developer-ladies

material we talk in our meet-ups

academic-kickstart

Easily create a beautiful website using Academic and Hugo

BioC2019

BioC2019: Where Software and Biology Connect

bioprojectR

project template for rstudio compatible with my everyday bioinformatics work

datasciencecoursera

Repo for the data science certificate at coursera

datasharing

The Leek group guide to data sharing

lpantano.github.io

me lpantano.github.io

mirna-evolution-analysis

some basic script to make multi-alignment and parse the changes

multi-package-containers

Testing building mulled containers for multi-requirement tools.

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

muscat

Multi-sample multi-group scRNA-seq analysis tools

myconfig

some personal files to work in cloud

mycv

latex code for my CV

myself

source code from my personal web page

nf-channel-debug

recipes

Conda recipes for the bioconda channel.

rshiny-mot

rshiny showing table with multi-omic tools

suite2p

cell detection in calcium imaging recordings

test-datasets

Test data to be used for automated testing with the nf-core pipelines

women-leaders-compbio

a list of companies in boston area to list all women leaders