lpantano

Lorena Pantano's starred repositories

wowchemy-hugo-themes

😍 EASILY BUILD THE WEBSITE YOU WANT - NO CODE, JUST MARKDOWN BLOCKS! 使用块轻松创建任何类型的网站 - 无需代码。一个应用程序，没有依赖项，没有 JS

Language:HTMLMIT7450 96 1797

typedb

TypeDB: the polymorphic database powered by types

Language:JavaMPL-2.03696 119 2414

deeplearning-biology

A list of deep learning implementations in biology

1966 230 3

esquisse

RStudio add-in to make plots interactively with ggplot2

Language:RNOASSERTION1754 53 224

actions-hugo

GitHub Actions for Hugo ⚡️ Setup Hugo quickly and build your site fast. Hugo extended, Hugo Modules, Linux (Ubuntu), macOS, and Windows are supported.

Language:TypeScriptMIT1367 15 81

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Language:NextflowMIT796 152 617

pyGenomeTracks

python module to plot beautiful and highly customizable genome browser tracks

Language:PythonGPL-3.0731 30 202

awesome-multi-omics

List of software packages for multi-omics analysis

MIT680 53 6

template-python

My template for new Python libraries.

Language:PythonUnlicense644 21 81

awesome-CRISPR

List of software/websites/databases/other stuff for genome engineering

MIT473 33 3

PHATE

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

Language:PythonGPL-2.0454 19 75

iSEE

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

Language:RMIT221 17 198

tools

Python package with helper tools for the nf-core community.

Language:PythonMIT217 141 990

muscat

Multi-sample multi-group scRNA-seq analysis tools

Language:R155 14 118

refgenie

Reference genome resource manager

Language:PythonBSD-2-Clause69 15 222

UMICollapse

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

Language:JavaMIT53 4 28