Lorena Pantano's repositories
bcbio-nextgen-vm
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
bcbio.rnaseq
Automatic RNA-seq DE caller benchmarking
bcbio.variation.recall
Parallel merging, squaring off and ensemble calling for genomic variants
homebrew-cbl
Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
hsinv379
data related to paper
IdeGen
detect fusion genes in inverted regions
invGEX
detect gene expression from inversion genotypes
notes.statistics
my notes about good resources I found over internet
papersDB
connect to pubmed to get main information and save in a db to be analyzed after that
pheatmap
Pretty heatmaps
pickleshare
File system based database that uses python pickles
pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
sql.js
SQLite compiled to JavaScript through Emscripten
sra
python package to download and convert rsa files
sydSeq
R package - sydSeq - various functions for gene expression analysis