Lorena Pantano's repositories
r2dropSmart
Sync entire folders to dropbox with rdrop2 package
java_seqbuster
java src for seqbuster scripts
simulate-miRNA-reads
Simulate miRNA reads using mature and hairpin miRNA database (http://www.mirbase.org/)
kraiklyn
A Hugo theme for one page documentation
seurat
R toolkit for single cell genomics
logging_exceptions
Self-logging exceptions: Attach log messages to exceptions and conditionally log them.
forgi
An RNA manipulation library.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
miRge
miRge - microRNA alignment software for small RNA-seq data, now at v2.0
stimulus.cc
source for the web page stimulus.cc
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
quagmir
A python-based isomiR quantification and analysis pipeline that utilizes a number of recent and novel miRNA biological insights to produce useful analytics
bcbioRNASeq
Quality control and differential expression for bcbio RNA-seq experiments.
smallRNACountData
plate to share smallRNAseq data analyzed with same methods
BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
SingleCellExperiment
S4 classes for single cell experiment data
MultiAssayExperiment
Bioconductor package for management of multi-assay data
small_rna_annotation
files from different databases adapted for pipelines
small-rna-in-parkinson
Specific small-RNA signatures in the amygdala at premotor and motor stages of Parkinson's disease revealed by deep sequencing analysis https://www.ncbi.nlm.nih.gov/pubmed/26530722
libglu-feedstock
A conda-smithy repository for libglu.
conda_r_skeleton_helper
Cleaning up Conda r-packages
lpantanoold.github.io
A web application to build your blog on GitHub
MINTmap
This is the code repository, to download MINTmap for basic usage please visit our website at
scripts_hsph
some useful scripts for projects
DNApi
De novo adapter prediction algorithm for small RNA sequencing data