Legume Information System (legumeinfo)

Legume Information System

legumeinfo

Geek Repo

The Legume Information System (LIS) is a USDA-supported project to collect, curate and distribute legume genomic and genetic data.

Location:Ames, Iowa and collaborators

Home Page:https://legumeinfo.org

Github PK Tool:Github PK Tool

Legume Information System's repositories

pandagma

Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.

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web-components

A collection of Web Components for interacting with and visualizing biological data.

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jekyll-legumeinfo

legumeinfo.org built with Jekyll and served on GitHub Pages

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microservices

A collection of microservices developed and maintained by the Legume Information System

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datastore-specifications

Specifications for directory naming, file naming, file contents in the LIS datastore

Funnotate

Functional annotation of FASTA sequences

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graphql-server

A GraphQL server that supports the Legume Information System and related biodata websites

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taxon-symbology

A TypeScript library for consistent coloring of visualizations by genus & species.

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website-ui-specs

User interface specification of components built for the Jekyll sites.

datastore-metadata

All the LIS Datastore YAML files under one roof.

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DSCensor

Process LIS Datastore and Provide Web Facing RESTFUL API

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aeschynomenemine

AeschynomeneMine

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arachismine

A mine containing Arachis duranensis, Arachis ipaensis, and Arachis hypogaea.

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cajanusmine

intermine instance for data from Cajanus genus

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cicermine

The new Cicer mine including wild type species

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gene-function-registry

A set of records (pages) for collecting information about gene function in a human- and machine-readable format.

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glycinemine

An InterMine for Glycine species

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legumeinfo.org

general site issues (or a place to log issues if you just want to put them somewhere and triage which repository they properly belong to later)

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legumemine

An InterMine which contains multiple legumes

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lensmine

Lens data from LIS

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lupinusmine

An InterMine containing Lupinus data from the LIS datastore.

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medicagomine

A mine for Medicago truncatula and Medicago sativa

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mine-dbmodel-resources

dbmodel/resources files common to all mines

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mine-webapp

Webapp components common to all mines: css, js, images, model, themes

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minimine

A small mine for testing GraphQL queries and such.

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phaseolusmine

An InterMine for Phaseolus species

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sequence-alignment

A TypeScript library containing pairwise and multiple sequence alignment algorithms

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trifoliummine

A mine with Trifolium data from the LIS Datastore

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viciamine

A mine with Vicia data from the LIS Datastore

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vignamine

A mine with Vigna data from the LIS Datastore

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