Legume Information System (legumeinfo)

Legume Information System

legumeinfo

Geek Repo

The Legume Information System (LIS) is a USDA-supported project to collect, curate and distribute legume genomic and genetic data.

Location:Ames, Iowa and collaborators

Home Page:https://legumeinfo.org

Github PK Tool:Github PK Tool

Legume Information System's repositories

pandagma

Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.

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web-components

A collection of Web Components for interacting with and visualizing biological data.

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jekyll-legumeinfo

legumeinfo.org built with Jekyll and served on GitHub Pages

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microservices

A collection of microservices developed and maintained by the Legume Information System

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datastore-specifications

Specifications for directory naming, file naming, file contents in the LIS datastore

Funnotate

Functional annotation of FASTA sequences

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graphql-server

A GraphQL server that supports the Legume Information System and related biodata websites

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mine-java

Common repo for webapps/src code shared amongst all LegFed mines

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jekyll-starter-legumeinfo

A Jekyll site that demonstrates how to use the legumeinfo Jekyll theme

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jekyll-theme-legumeinfo

A Jekyll theme for the Legume Information System and related biodata websites

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datastore-metadata

All the LIS Datastore YAML files under one roof.

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DSCensor

Process LIS Datastore and Provide Web Facing RESTFUL API

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LIS-autocontent

Scrapes the LIS datastore and populates various configs and databases for deployment

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aeschynomenemine

AeschynomeneMine

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arachismine

A mine containing Arachis duranensis, Arachis ipaensis, and Arachis hypogaea.

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cajanusmine

intermine instance for data from Cajanus genus

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datastore-registry

Registry of unique KEY4 keys and their associated Genus-species-collection information

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gene-function-registry

A set of records (pages) for collecting information about gene function in a human- and machine-readable format.

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glycinemine

An InterMine for Glycine species

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intermine

A powerful open source data warehouse system

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legumemine

An InterMine which contains multiple legumes

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lis-bio-postprocess

Bespoke post-processors for LIS mines sourced from the LIS datastore.

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lis-bio-sources

The InterMine loaders for importing data from the LIS datastore.

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lis_gis

Geographic map browser for LIS germplasm accession and trait evaluation data

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mine-libs

Extra JARs created for the LIS mines; place under the mine root in libs.

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mine-ontology-data

Scripts to update the ontology data that are loaded into the mines

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mine-webapp

Webapp components common to all mines: css, js, images, model, themes

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minimine

A small mine for testing GraphQL queries and such.

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phaseolusmine

An InterMine for Phaseolus species

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vignamine

A mine with Vigna data from the LIS Datastore

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