legumeinfo / microservices

A collection of microservices developed and maintained by the Legume Information System

https://legumeinfo.org/

legumeinfo/microservices Issues

Are the linkouts getting a bit GCV-redundant?
Updated 7 months ago5
Add DSCensor-OpenAPI as Microservice
Updated 8 months ago3
micro_synteny_search exceeding redis maxclients limit
Updated 9 months ago5
Gene location linkout testing with cicar.ICC4958.gnm2.ann1.Ca_00001 fails
Closed 9 months ago1
Change default redis_loader --load-type to new
Closed 10 months ago1
HOWTO build the GCV redis from a GFF from scratch
Closed 10 months ago6
Return a 404 or 200 with message rather than a 500
Closed 10 months ago5
Linkout methods for collections
Updated a year ago5
chado flavor of redis_loading seems broken
Updated a year ago
How to load a GFF into Redis? Need end-to-end example after fresh install.
Closed a year ago12
Get Funnotate linkout on genes with no gene family assignment
Updated a year ago4
Gene linkout testing with cicar.ICC4958.gnm2.ann1.Ca_00001 fails
Closed a year ago21
Gene linkouts Soybase URL is broken
Updated a year ago3
Use isort for consistent import statements
Updated a year ago1
flake8 for python linting
Updated a year ago2
Research and Implement Black
Updated a year ago3
Add Docker Compose files to Individual Microservices
Updated 2 years ago
chromosomes are everywhere- should they be?
Updated 2 years ago1
Implement logging
Closed 2 years ago1
Upgrade uvloop syntax
Closed 2 years ago10
Peanut targets missing from macro-synteny service
Closed 2 years ago1
Add schema version key to Redis database
Closed 2 years ago9
Switch RediSearch text field to tag fields
Closed 2 years ago6
Certain search terms don't get any results
Closed 2 years ago3
Implement database migrations
Updated 2 years ago
Add dependabot to microservices repo
Closed 2 years ago1
Use a package manager for the microservices
Closed 2 years ago11
Replace redisearch python package with redis >= 4.0.0
Closed 2 years ago15
Add minimum chromosome length parameter to (pairwise) macro-synteny microservices
Closed 2 years ago1
Add minimum genes parameter to (pairwise) macro-synteny microservices
Closed 2 years ago1
Optimize macro-synteny services for fragmented assemblies
Closed 2 years ago17
make redis_loader transactional
Closed 2 years ago17
Redis
Updated 2 years ago
Add flag to loader for whether to load chromosome or supercontigs, or both
Updated 3 years ago
Microservice API versioning
Closed 3 years ago2
Automate .proto compiling
Closed 3 years ago10
Automate .proto compiling
Closed 3 years ago1
aioredis v2 upgrade needed
Closed 3 years ago1
redis_loader in gff mode ignores orphan genes
Closed 3 years ago1
redis_loader in gff mode ignores non-chromosomes (supercontigs)
Closed 3 years ago1
Dockerize RediSearch loader
Closed 3 years ago1
Combine RediSearch loaders
Closed 3 years ago2
Add optional parameter to RediSearch loader append load type to control how existing entries are handled
Updated 3 years ago
gff_to_redisearch: make --extend default, add --clear option
Closed 3 years ago2
Update the database Docker container to automatically load data from GFF or Chado dump
Closed 3 years ago1
Upgrade aioHTTP
Closed 3 years ago1
Upgrade RediSearch
Closed 3 years ago1
Add extend functionality to the chado and GFF loaders
Closed 4 years ago1
Add proxy for microservices
Closed 4 years ago11
genes service: should we consider a region-based way of doing this?
Closed 4 years ago2