Legume Information System (legumeinfo)

Legume Information System

legumeinfo

Geek Repo

The Legume Information System (LIS) is a USDA-supported project to collect, curate and distribute legume genomic and genetic data.

Location:Ames, Iowa and collaborators

Home Page:https://legumeinfo.org

Github PK Tool:Github PK Tool

Legume Information System's repositories

mine-issues

Report ALL issues on LIS mines here! Regardless of which mine you found it on!

pytest-datadir-mgr

Pathlib-based downloads, caching of generated files, and a context for temp directories

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tripal_phylotree

LIS project- tripal module for chado phylogeny and gene families

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ArachisPheno

AraPheno source code for http://arapheno.1001genomes.org

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azulejo

Tiling phylogenetic space with subtrees

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bluegenes

A friendly next-generation interface for Genomic data discovery powered by InterMine

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chickpeamine

A mine containing chickpea (desi) and chickpea (kabuli) genomes.

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cmap

A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.

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cmap-js

Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).

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CoNekT

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

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domain_search

Protein domain search

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gcv-django

Deprecated django-based implementation of the GCV service layer built on Chado

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gcvit

CViT based tool for visualising VCF files.

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Gene-WebComponents

A TypeScript library that provides WebComponents for viewing genes

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gffpandas

Parse GFF3 into Pandas dataframes

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imjs-help

Tips and tricks for LIS users of imjs, the InterMine client-side query package.

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lis-gwasresult-visualizer

A bluegenes visualizer for GWASResult

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lis_expression

Expression data Drupal module for LIS/PB based on 'ongenome' schema.

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lis_home

LIS Home Page

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lis_species_resources

Module to create html for the lis species page and genome page listing the resources available for a species/genome from an excel sheet.

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lis_tours

Multipage tours using bootstrap tours javascript library

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mines-page

The default page where the various mines are linked

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msa

Modular BioJS compoment for a multiple sequence alignment

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ncbi-bio-sources

InterMine loaders for NCBI data

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public_bionorm_metadata

Metadata for the legumeinfo public for use with bionorm

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stat.seqs

A module to analyze multiple seqs

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tnt-lis

Visualization of trees and track based annotations

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tripal_linkout

The Linkout module provides a web service for generation of external links

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