Legume Information System's repositories
mine-issues
Report ALL issues on LIS mines here! Regardless of which mine you found it on!
pytest-datadir-mgr
Pathlib-based downloads, caching of generated files, and a context for temp directories
tripal_phylotree
LIS project- tripal module for chado phylogeny and gene families
ArachisPheno
AraPheno source code for http://arapheno.1001genomes.org
azulejo
Tiling phylogenetic space with subtrees
bluegenes
A friendly next-generation interface for Genomic data discovery powered by InterMine
chickpeamine
A mine containing chickpea (desi) and chickpea (kabuli) genomes.
cmap
A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.
cmap-js
Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).
CoNekT
CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.
domain_search
Protein domain search
gcv-django
Deprecated django-based implementation of the GCV service layer built on Chado
gcvit
CViT based tool for visualising VCF files.
Gene-WebComponents
A TypeScript library that provides WebComponents for viewing genes
gffpandas
Parse GFF3 into Pandas dataframes
imjs-help
Tips and tricks for LIS users of imjs, the InterMine client-side query package.
lis-gwasresult-visualizer
A bluegenes visualizer for GWASResult
lis_expression
Expression data Drupal module for LIS/PB based on 'ongenome' schema.
lis_home
LIS Home Page
lis_species_resources
Module to create html for the lis species page and genome page listing the resources available for a species/genome from an excel sheet.
lis_tours
Multipage tours using bootstrap tours javascript library
mines-page
The default page where the various mines are linked
msa
Modular BioJS compoment for a multiple sequence alignment
ncbi-bio-sources
InterMine loaders for NCBI data
public_bionorm_metadata
Metadata for the legumeinfo public for use with bionorm
stat.seqs
A module to analyze multiple seqs
tnt-lis
Visualization of trees and track based annotations
tripal_linkout
The Linkout module provides a web service for generation of external links