Legume Information System's repositories
legumemine
An InterMine which contains multiple legumes
cicermine
The new Cicer mine including wild type species
cajanusmine
intermine instance for data from Cajanus genus
arachismine
A mine containing Arachis duranensis, Arachis ipaensis, and Arachis hypogaea.
aeschynomenemine
AeschynomeneMine
vignamine
A mine with Vigna data from the LIS Datastore
jekyll-theme-legumeinfo
A Jekyll theme for the Legume Information System and related biodata websites
shiny-microservices
R/Shiny application for testing LIS microservices instances
jekyll-starter-legumeinfo
A Jekyll site that demonstrates how to use the legumeinfo Jekyll theme
LIS-autocontent
Scrapes the LIS datastore and populates various configs and databases for deployment
intermine
A powerful open source data warehouse system
lis-bio-postprocess
Bespoke post-processors for LIS mines sourced from the LIS datastore.
lis_gis
Geographic map browser for LIS germplasm accession and trait evaluation data
datastore-issues
mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance
mine-ontology-data
Scripts to update the ontology data that are loaded into the mines
mine-libs
Extra JARs created for the LIS mines; place under the mine root in libs.
mine-webapp-resources
webapp/src/main/resources files for all mines
jbrowse-plugin-broadcastchannel
BroadcastChannel plugin for JBrowse 2
HapMap2
Restructuring of HAPMAP Site
gcv-docker-compose
Resources for running the Genome Context Viewer with Docker Compose
lis-linkagegroup-plot
Markers and QTLs along a linkage group
lis-gwas-plot
Show a Manhattan plot on a GWAS report page
lis-geneticmap-plot
Bluegenes genetic map report page plot
lis-expression-barchart
Display a barchart of expression on a SequenceFeature report page, if it exists.
AHRD-not-HARD
a bit of wrapper for running the AHRD analysis in "standalone" mode (ie not via the web interface)
lis-expression-heatmap
A bluegenes expression heatmap tool for lists
click_loguru
Simple loguru logging to file and stderr for your click application
bionorm
Normalize and check genomic data against Data Store standards