Legume Information System (legumeinfo)

Legume Information System

legumeinfo

Geek Repo

The Legume Information System (LIS) is a USDA-supported project to collect, curate and distribute legume genomic and genetic data.

Location:Ames, Iowa and collaborators

Home Page:https://legumeinfo.org

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Legume Information System's repositories

ConektLegumes

Integrate CoNekT (Coexpression Network Toolkit) with legumes expression data into LIS.

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brilliant_gallery

Fork of Drupal Brilliant Gallery module

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legume_stock

Customizations of the Tripal stock module

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scripts-qtlloader

Scripts for loading QTL data

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lightshop

a module that provides basket (shopping cart) functionality

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lis_citations

Drupal module to show citations for LIS NAR papers at Pubmed

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chado_metadata_loaders

Scripts to load metadata into Chado

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grinlegumes

GRIN Legumes: GRIN germplasm data at LIS

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tripal_gene

Allows gene searches

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tnt.tree

Tree visualization using TnT

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peanut_custom

Tripal/Drupal module containing customizations for PeanutBase

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legume_featuremap

Customize search and view for featuremaps

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legume_organism

LegumeInfo customizations of the Tripal organism module

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peanutbase_theme

peanutbase.org's drupal/tripal theme

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jira-issues

placeholder repo for issues migrating from JIRA system, to be moved to their appropriate places later

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ongenome_schema

Database schema suitable for gene expression RNASeq data and other counts based data mapped to a reference genome

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lis_legume_recent_pubs

List recent publications on legumes from Pubmed via Eutils and JS http requests.

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tripal_funnotate

implement functional annotation service using tripal framework and various third party tools

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lis_legumeinfo_theme

Drupal/Tripal theme for legumeinfo.org

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lis_custom

Custom code for LegumeInfo

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lis_tripal_analysis_expression

An LIS customization module for 'Tripal_analysis_expression' (Tripal Extension) that specifies LIS designed templates fo r displaying expression profile.

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cvitjs

CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.

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grinconnect

GRIN Connect: Connect to the USDA GRIN Germplasm database from LIS (and peanutBase).

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arachis_recent_pubs

Recents publications on Arachis/peanut from Pubmed (like lis_legumes_recent_pubs)

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arachis_bioproj

Module to list the Arachis related BioProjects at NCBI

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