kdm9

axe

Rapid competitive read demulitplexer. Made with tries.

seqhax

Small sequence analysis tools that don't deserve their own repos.

Acanthophis

A comprehensive, opinionated plant variant calling pipeline in Snakemake

NVTK

Tools for managing natural variation collections

blindschleiche

19 bioinformatics utilities in a trenchcoat

bfx-containers

bioconda-recipes

Conda recipes for the bioconda channel.

borg

Deduplicating archiver with compression and authenticated encryption.

conda-pkgs

My conda packages. mamba install -c kdm801 $PGK to install

diamond

Accelerated BLAST compatible local sequence aligner.

GENESPACE

gvcf_norm

gVCF allele normalizer

kdm9.R

markdown-lightbox2

extension for python markdown to lightbox images

MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

miniprothint

Miniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.

notebook-template

odgi

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

paco_ot2

pggb

the pangenome graph builder

plassembler

Program to quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates

rab

radhax

Scripts for analysis of reduced-representation sequencing (GBS, RADseq)

raugraf

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster

SQANTI3

Tool for the Quality Control of Long-Read Defined Transcriptomes

tkdm

trears

yak

Yet another k-mer analyzer