kdm9

kWIP

De novo estimates of genetic relatedness from next-gen sequencing data

euc-dp15-workspace

Flye

Fast and accurate de novo assembler for single molecule sequencing reads

gdmhelpers

kdmRutil

raijin-ansible

Configure and install group-wide software modules on Raijin using ansible

2016-bodega-gbs

Course for the Third Week

2018-robyn-shaw-acacia

ad-libs

local ancestry inference tool for low-coverage resequencing data

bamCB2RG

BAM utility that swaps the CB (cell barcode) and RG tags, such that each cell is considered a sample in variant calling

bed12ToGTF

converts BED12 to GTF format file

conStruct

method for modeling continuous and discrete population genetic structure

GDM

R package for Generalized Dissimilarity Modeling

GridLMM

GridLMM package

GUS-LD

Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium

kdm801-vim

extra vim customisation

ls2ncdu

Parser for systems which only have `ls -lR` available

macro-diffuser

A diffuser for the YN24-EX macro flash

minion_qc

Quality control for MinION sequencing data

ms-ld

Example LD simulation with recombination using ms and libsequence.

Nvim-R

Vim plugin to work with R

pandoc-crossref

Pandoc filter for cross-references

pcangsd

Framework for analyzing low depth NGS data in heterogeneous populations using PCA.

population-resequencing-simulation

A pipeline to simulate a series of populations, and then simulate reads from a resequencing experiment of each population.

posterdown

Use RMarkdown to generate PDF Conference Posters via HTML

raijin-modules

xe2 modules on raijin

Rcode-Stats-Bubbles

Here is the material for a workshop series about biostatistics in R. Topics will include data management, a lot of (generalized) linear (mixed) models, bayesian and frequentist principles, simulations, multi-model inference... or whatever you ask me for

smbe18-poster

tickscripts

Tickscripts for alerts for Kapacitor

TreeScaper

TreeScaper is distributed under the GNU General Public License.