kdm9 / Acanthophis

A comprehensive, opinionated plant variant calling pipeline in Snakemake

kdm9/Acanthophis Issues

Review comments on the JOSS software paper
Closed 5 months ago10
Unable to run tests: missing 'populate_metadata' in module 'acanthophis'
Closed 4 months ago9
[JOSS Review] Source install v1.0.0rc4.dev6 error on OSX
Closed 5 months ago7
Included Dockerfile does not build
Closed 5 months ago1
Additional CLI entry point for running the whole workflow
Updated 5 months ago
[JOSS Review] Error with Linux Tests - `init` and also Freebayes
Closed 5 months ago7
[JOSS Review] Errors with Mac Installation
Closed 5 months ago1
[JOSS Review] tab/space bug
Closed 5 months ago3
Missing contribution/community guidelines
Closed 5 months ago1
[JOSS Review] kraken.rules error
Closed 5 months ago2
[JOSS Review] Improve `tests` docs
Closed 5 months ago
[JOSS Review] Installation Instructions in tests wrong .yml file
Closed 5 months ago1
Configuration docs
Closed 8 months ago
possible rename: holopipe
Closed 8 months ago
Tidy and merge all profiles from all instance of Acanthophis
Closed 9 months ago
config file validation
Closed 2 years ago1