Dr. K. D. Murray's repositories
FastaSanitiser
A python class/cli to sanitise fasta IDs to something sane, then back again. Lookin' at you, gisaid_sequences.fasta
ansible-role-nginx
Ansible Role - Nginx
attachment-downloader
Simple tool for downloading email attachments for all emails in a given folder using an IMAP client
bullet-train.zsh
:bullettrain_side: An oh-my-zsh shell theme based on the Powerline Vim plugin
constructhelpers
Assorted helpers for G. Bradburd's conStruct
dna-proto-workflow
Snakemake ProtoWorkflow for DNA Analysis.
dnglab
Camera RAW to DNG file format converter
kdm-snakemake-helpers
OBSOLETE: see https://github.com/kdm9/Acanthophis
local_pca
Methods for examining PCA locally along the genome.
ouroborUSCO
Iterative extraction of busco loci from short read datasets for phylo purposes
RawTherapee
A powerful cross-platform raw photo processing program
rmlint
Extremely fast tool to remove duplicates and other lint from your filesystem
sarscov2phylo
phylogenetics for SARS-CoV-2
sigal
yet another simple static gallery generator
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
teaching-virtual-machine
Ansible code to spin up a VM for teaching bioinformatics
vim-snakemake
Updated Snakemake syntax highlighting copied from the official repository
windowlickR
Windowed vcf analyses in R