Justice Tresor NGOM's repositories
skDER
skDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.
PythonTUBS
Python introduction for life scientists
CompMutTB
Statistical framework to identify compensatory mutations from M. tuberculosis WGS.
MetaCerberus
Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
ggplot2-graphic-design
"Graphic Design with ggplot2", a 2-day rstudio::conf(2022) Workshop by Cédric Scherer
WAS
Weekly Analytics Show
seqtk
Toolkit for processing sequences in FASTA/Q formats
P-DOR
Quick and easy outbreak reconstruction pipeline
awesome-bioinformatics-education
resources for bioinformatics education
DeepPheWAS
An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)
wowchemy-hugo-themes
😍 EASILY BUILD THE WEBSITE YOU WANT - NO CODE, JUST MARKDOWN BLOCKS! 创建在线课程,学术简历或初创网站。#OpenScience
GSBAfrica2023
GSBAfrica course manual site
Online_R_learning
Online R learning for applied statistics
ggplot2-book
ggplot2: elegant graphics for data analysis
iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
PopPUNK
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
esquisse
RStudio add-in to make plots interactively with ggplot2
sim_cluster_MTB
Pipeline to simulate the evolution of genome sequences of MTB under different conditions
gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
PopPIPE
Population analysis PIPEline 🛠🧬
Bacterial_genomics_software_tools
Curated list of software tools for various aspects of prokaryote genomic analyses
MPCMArchive
Archive of Online Practical Materials for the book of Modern Phylogenetic Comparative Methods (ed. Garamszegi, 2014)