justicengom

Justice Tresor NGOM's starred repositories

Profiling NTM WGS data

Language:PythonGPL-3.01000

Time-scaled haplotypic density (THD) implementation for R. Estimates epidemic success from pathogen genetic data.

Language:RMIT100

A systematic framework to identify compensatory mutations from M. tuberculosis whole genome sequences

Language:RMIT300

Nextflow training material

Language:NextflowNOASSERTION11200

Randomly subsample sequencing reads or alignments

Language:RustMIT20000

QuantTB is a SNP based method to identify and quantify individual strains present in tuberculosis whole genome sequencing datasets.

GPL-3.0200

Language:Python100

Language:JavaScript1000

Language:JavaScript200

This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data

Language:PythonLGPL-3.01100

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

Language:PythonGPL-3.010400

Language:Python600