justicengom / DeepPheWAS

An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)

DeepPheWAS

Overview

DeepPheWAS is an R package for running phenome wide association studies (PheWAS). It allows user control of all the stages of PheWAS, from data wrangling, through phenotype generation and association testing.

Installation

# The development version from GitHub:
# install.packages("devtools")
devtools::install_github("Richard-Packer/DeepPheWAS")

Use

For a detailed tutorial see our Github pages site.

https://richard-packer.github.io/DeepPheWAS_site/