Justice Tresor NGOM's repositories
Bacterial_genomics_software_tools
Curated list of software tools for various aspects of prokaryote genomic analyses
awesome-bioinformatics-education
resources for bioinformatics education
CompMutTB
Statistical framework to identify compensatory mutations from M. tuberculosis WGS.
DeepPheWAS
An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)
esquisse
RStudio add-in to make plots interactively with ggplot2
ggplot2-book
ggplot2: elegant graphics for data analysis
ggplot2-graphic-design
"Graphic Design with ggplot2", a 2-day rstudio::conf(2022) Workshop by Cédric Scherer
GSBAfrica2023
GSBAfrica course manual site
gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
MetaCerberus
Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
MPCMArchive
Archive of Online Practical Materials for the book of Modern Phylogenetic Comparative Methods (ed. Garamszegi, 2014)
Online_R_learning
Online R learning for applied statistics
P-DOR
Quick and easy outbreak reconstruction pipeline
PopPIPE
Population analysis PIPEline 🛠🧬
PopPUNK
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
PythonTUBS
Python introduction for life scientists
seqtk
Toolkit for processing sequences in FASTA/Q formats
sim_cluster_MTB
Pipeline to simulate the evolution of genome sequences of MTB under different conditions
skDER
skDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
WAS
Weekly Analytics Show
wowchemy-hugo-themes
😍 EASILY BUILD THE WEBSITE YOU WANT - NO CODE, JUST MARKDOWN BLOCKS! 创建在线课程，学术简历或初创网站。#OpenScience