Gregory Jefferis's repositories
fiji-cmtk-gui
Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ
gold_trainingsubset_79_all
BigNeuron gold training set + initial automated reconstructions.
AnalysisSuiteBin
These are additional perl/shell scripts that are intended to support my AnalysisSuite package
bigneuronimperial
Some analysis associated with the BigNeuron hackathon at Imperial College Jan 2016
fluorender
FluoRender is an interactive rendering tool for confocal microscopy data visualization.
PNVisualisationInAmira
Examples of how to visualise groups of Projection Neurons in Amira
CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
CATMAID-to-Blender
Plugin for Blender to interface with CATMAID Server and Pull Data
datapackage
An R package to handle data packages
deformetricar
R wrapper for deformetrica registration tool
DoOR.functions
R package containing the functions used to build the Database of Odor Responses
jsonlite
A Robust, High Performance JSON Parser and Generator for R
kohl2015latex
Latex version of Current Opinion article written by Kohl, Huoviala and Jefferis.
nat.as
NAT: Wrapper for informal neuroanatomy AnalysisSuite codebase
pkgdown
Generate static html documentation for an R package
pkgusingigraph
A test package to highlight problems setting igraph options
progress
Progress bar in your R terminal
r4ds
R for data science
rflyem
Tools for working with Janelia FlyEM data
rgl
Read-only mirror of "rgl" from r-forge SVN.
sequence-graphs
Mapping scheme test software, to be extended to sequence graphs.
sfr
simple features for R
slackr
:hash: A package to send webhook API messages to Slack.com channels/users from R
testdataalias
Test data objects with aliases
Z-Brain
Z-Brain Viewer and Analysis Scripts for MAP-Mapping