Hans Johnson's repositories
GDCM
Grassroots DICOM Mirror
KWStyle
Kitware Style Checker
nipype
Workflows and interfaces for neuroimaging packages
dupeguru
Find duplicate files
dicom3tools
This is an UN-OFFICIAL repository of the dicom3tools library by David Clunie. Official location: http://www.dclunie.com/dicom3tools/workinprogress/. Tags correspond to snapshots of the source code published at the original location.
MONAI
AI Toolkit for Healthcare Imaging
vxl
A multi-platform collection of C++ software libraries for Computer Vision and Image Understanding.
conversion
Various mri conversion/modification scripts
tclap
Templatized C++ Command Line Parser mirror
SlicerDiffusionQC
Quality checking of DWMRI
PolyDataCompression
Compress VTK or VTP files, allows to select the data type (binary, ASCII or appended), the level of compression (between 0 and 9, the difference however is barely noticeable) and enable the use of the wildcard (*) with SlicerExecutionModel.
NormalizeDWIGradientVectors
This tool normalizes Diffusion Weighted Images (DWI) gradients.
ITKTransformTools
Tools allowing to perform basic operations on ITK transform files such as printing their content, concatenating them, inverting them, computing the smaller bounding box around a transformed image...
CurveCompare
Compares two fibers file with different metrics: euclidean distance (closest points), tangent metric, curvature metric, overlap, probabilistic overlap
CombineDWIs
Combine Diffusion Weighted Images (NRRD) with potentially different b-values
ReadImageHeader
Small tool to print (ITK) image header information. It can also be used to convert an image into a different format.
hdf5
Official HDF5® Library Repository
ITKRLEImage
Run-length encoded memory compression scheme for an itk::Image
EvaluateSegmentation
A program to evaluate the quality of image segmentations.
scifio-imageio
SCIFIO ImageIO plugin for ITK
MultipleImageIterator
ITK remote module from an IJ article at http://www.insight-journal.org/browse/publication/915
ITKUltrasound
ITK module with classes particularly useful for ultrasound.
ITKStrain
ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation.
ITKPhaseSymmetry
Multi-scale Steerable Phase-Symmetry Filters for ITK
ITKMorphologicalContourInterpolation
An implementation of morphological contour interpolation
ITKIOScanco
ITK Image IO for Scanco MicroCT .ISQ files