Hans Johnson's repositories
CombineDWIs
Combine Diffusion Weighted Images (NRRD) with potentially different b-values
conversion
Various mri conversion/modification scripts
CurveCompare
Compares two fibers file with different metrics: euclidean distance (closest points), tangent metric, curvature metric, overlap, probabilistic overlap
dicom3tools
This is an UN-OFFICIAL repository of the dicom3tools library by David Clunie. Official location: http://www.dclunie.com/dicom3tools/workinprogress/. Tags correspond to snapshots of the source code published at the original location.
dupeguru
Find duplicate files
EvaluateSegmentation
A program to evaluate the quality of image segmentations.
ITKIOScanco
ITK Image IO for Scanco MicroCT .ISQ files
ITKMorphologicalContourInterpolation
An implementation of morphological contour interpolation
ITKPhaseSymmetry
Multi-scale Steerable Phase-Symmetry Filters for ITK
ITKRLEImage
Run-length encoded memory compression scheme for an itk::Image
ITKStrain
ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation.
ITKTransformTools
Tools allowing to perform basic operations on ITK transform files such as printing their content, concatenating them, inverting them, computing the smaller bounding box around a transformed image...
ITKUltrasound
ITK module with classes particularly useful for ultrasound.
KWStyle
Kitware Style Checker
MultipleImageIterator
ITK remote module from an IJ article at http://www.insight-journal.org/browse/publication/915
nipype
Workflows and interfaces for neuroimaging packages
NormalizeDWIGradientVectors
This tool normalizes Diffusion Weighted Images (DWI) gradients.
PolyDataCompression
Compress VTK or VTP files, allows to select the data type (binary, ASCII or appended), the level of compression (between 0 and 9, the difference however is barely noticeable) and enable the use of the wildcard (*) with SlicerExecutionModel.
ReadImageHeader
Small tool to print (ITK) image header information. It can also be used to convert an image into a different format.
scifio-imageio
SCIFIO ImageIO plugin for ITK
SlicerDiffusionQC
Quality checking of DWMRI
vxl
A multi-platform collection of C++ software libraries for Computer Vision and Image Understanding.